LINGO4 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LINGO4

Leucine rich repeat and Ig domain containing 4. (629 aa)

Predicted Functional Partners:

ADGRL1

0.743

ADGRL3

0.743

ADGRL2

0.743

LRRC10

0.497

LRRC18

0.492

LRRC28

0.472

LRRC30

0.465

LRRC8E

0.440

LRRC39

0.429

U3KN95_RABIT

0.427

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL1	LINGO4	ENSOCUP00000023951	ENSOCUP00000001193	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat and Ig domain containing 4.	0.743
ADGRL1	LRRC10	ENSOCUP00000023951	ENSOCUP00000014788	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.743
ADGRL1	LRRC18	ENSOCUP00000023951	ENSOCUP00000024949	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 18.	0.743
ADGRL1	LRRC30	ENSOCUP00000023951	ENSOCUP00000001459	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 30.	0.743
ADGRL1	LRRC39	ENSOCUP00000023951	ENSOCUP00000024197	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 39.	0.743
ADGRL1	LRRC8E	ENSOCUP00000023951	ENSOCUP00000025873	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 8 VRAC subunit E.	0.743
ADGRL1	U3KN95_RABIT	ENSOCUP00000023951	ENSOCUP00000026704	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.758
ADGRL2	LINGO4	ENSOCUP00000044036	ENSOCUP00000001193	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat and Ig domain containing 4.	0.743
ADGRL2	LRRC10	ENSOCUP00000044036	ENSOCUP00000014788	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.743
ADGRL2	LRRC18	ENSOCUP00000044036	ENSOCUP00000024949	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 18.	0.743
ADGRL2	LRRC30	ENSOCUP00000044036	ENSOCUP00000001459	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 30.	0.743
ADGRL2	LRRC39	ENSOCUP00000044036	ENSOCUP00000024197	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 39.	0.743
ADGRL2	LRRC8E	ENSOCUP00000044036	ENSOCUP00000025873	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 8 VRAC subunit E.	0.743
ADGRL2	U3KN95_RABIT	ENSOCUP00000044036	ENSOCUP00000026704	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.766
ADGRL3	LINGO4	ENSOCUP00000030893	ENSOCUP00000001193	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat and Ig domain containing 4.	0.743
ADGRL3	LRRC10	ENSOCUP00000030893	ENSOCUP00000014788	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.743
ADGRL3	LRRC18	ENSOCUP00000030893	ENSOCUP00000024949	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 18.	0.743
ADGRL3	LRRC30	ENSOCUP00000030893	ENSOCUP00000001459	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 30.	0.743
ADGRL3	LRRC39	ENSOCUP00000030893	ENSOCUP00000024197	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 39.	0.743
ADGRL3	LRRC8E	ENSOCUP00000030893	ENSOCUP00000025873	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 8 VRAC subunit E.	0.743