Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF170Ring finger protein 170. (258 aa)    
Predicted Functional Partners:
ERLIN1
ER lipid raft associated 1.
    
 
 0.948
ERLIN2
ER lipid raft associated 2.
    
 
 0.945
TMUB1
Transmembrane and ubiquitin like domain containing 1.
    
 
 0.944
C6orf120
Chromosome 6 open reading frame 120.
   
  
 0.792
CGRRF1
Cell growth regulator with ring finger domain 1.
      
 0.768
RNFT1
Uncharacterized protein.
      
 0.723
FAM8A1
Family with sequence similarity 8 member A1.
   
  
 0.713
HERPUD2
HERPUD family member 2.
      
 0.711
ITPR1
Inositol 1,4,5-trisphosphate receptor type 1.
    
 
 0.700
RNF103
Ring finger protein 103.
      
 0.699
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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