Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RRNAD1Ribosomal RNA adenine dimethylase domain containing 1. (515 aa)    
Predicted Functional Partners:
NUDT18
Nudix hydrolase domain-containing protein.
   
  
 0.748
RSAD1
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
      
 0.685
UROS
HEM4 domain-containing protein.
   
  
 0.656
FFAR4
Free fatty acid receptor 4.
     
  0.650
COX18
Cytochrome c oxidase assembly factor COX18.
      
 0.608
METTL9
Methyltransferase like 9.
      
 0.599
GSTZ1
Glutathione S-transferase zeta 1; Belongs to the GST superfamily.
      
 0.598
ASMTL
Uncharacterized protein.
      
 0.597
GATSL2
Uncharacterized protein.
   
 0.592
MTRF1
Mitochondrial translation release factor 1.
   
  
 0.592
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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