Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRAF3IP1Uncharacterized protein. (340 aa)    
Predicted Functional Partners:
IFT57
Intraflagellar transport 57.
    
 0.980
IFT172
Intraflagellar transport 172.
    
 0.976
IFT20
Intraflagellar transport 20.
    
 0.976
IFT80
Intraflagellar transport 80.
    
 0.972
CLUAP1
Clusterin associated protein 1.
   
 0.972
IFT52
Intraflagellar transport 52.
    
 0.971
IFT22
Intraflagellar transport 22.
    
 0.969
IFT81
Intraflagellar transport 81.
   
 0.967
IFT88
Intraflagellar transport 88.
   
 0.965
IFT27
Uncharacterized protein.
    
 0.955
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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