G1SFQ9_RABIT protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G1SFQ9_RABIT

RRM domain-containing protein. (499 aa)

Predicted Functional Partners:

TRA2A

0.608

TRA2B

0.602

UBE2I

0.534

ERH

0.527

G1TJM8_RABIT

0.527

G1TKN7_RABIT

0.527

G1TTS2_RABIT

0.527

ENSOCUP00000041756

0.520

RBM3

0.505

ELAVL1

0.486

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL1	ENSOCUP00000041756	ENSOCUP00000013630	ENSOCUP00000041756	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.411
ELAVL1	ERH	ENSOCUP00000013630	ENSOCUP00000003999	ELAV-like protein; Belongs to the RRM elav family.	Enhancer of rudimentary homolog; May have a role in the cell cycle.	0.411
ELAVL1	G1SFQ9_RABIT	ENSOCUP00000013630	ENSOCUP00000001369	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.486
ELAVL1	G1TJM8_RABIT	ENSOCUP00000013630	ENSOCUP00000017156	ELAV-like protein; Belongs to the RRM elav family.	Enhancer of rudimentary homolog; May have a role in the cell cycle.	0.411
ELAVL1	G1TKN7_RABIT	ENSOCUP00000013630	ENSOCUP00000017523	ELAV-like protein; Belongs to the RRM elav family.	Uncharacterized protein.	0.411
ELAVL1	G1TTS2_RABIT	ENSOCUP00000013630	ENSOCUP00000020444	ELAV-like protein; Belongs to the RRM elav family.	Enhancer of rudimentary homolog; May have a role in the cell cycle.	0.411
ELAVL1	RBM3	ENSOCUP00000013630	ENSOCUP00000001959	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 3.	0.748
ELAVL1	TRA2A	ENSOCUP00000013630	ENSOCUP00000022441	ELAV-like protein; Belongs to the RRM elav family.	Transformer 2 alpha homolog.	0.667
ELAVL1	TRA2B	ENSOCUP00000013630	ENSOCUP00000029659	ELAV-like protein; Belongs to the RRM elav family.	Transformer 2 beta homolog.	0.818
ENSOCUP00000041756	ELAVL1	ENSOCUP00000041756	ENSOCUP00000013630	RRM domain-containing protein.	ELAV-like protein; Belongs to the RRM elav family.	0.411
ENSOCUP00000041756	G1SFQ9_RABIT	ENSOCUP00000041756	ENSOCUP00000001369	RRM domain-containing protein.	RRM domain-containing protein.	0.520
ENSOCUP00000041756	RBM3	ENSOCUP00000041756	ENSOCUP00000001959	RRM domain-containing protein.	RNA binding motif protein 3.	0.523
ENSOCUP00000041756	TRA2A	ENSOCUP00000041756	ENSOCUP00000022441	RRM domain-containing protein.	Transformer 2 alpha homolog.	0.507
ENSOCUP00000041756	TRA2B	ENSOCUP00000041756	ENSOCUP00000029659	RRM domain-containing protein.	Transformer 2 beta homolog.	0.718
ERH	ELAVL1	ENSOCUP00000003999	ENSOCUP00000013630	Enhancer of rudimentary homolog; May have a role in the cell cycle.	ELAV-like protein; Belongs to the RRM elav family.	0.411
ERH	G1SFQ9_RABIT	ENSOCUP00000003999	ENSOCUP00000001369	Enhancer of rudimentary homolog; May have a role in the cell cycle.	RRM domain-containing protein.	0.527
ERH	TRA2B	ENSOCUP00000003999	ENSOCUP00000029659	Enhancer of rudimentary homolog; May have a role in the cell cycle.	Transformer 2 beta homolog.	0.557
G1SFQ9_RABIT	ELAVL1	ENSOCUP00000001369	ENSOCUP00000013630	RRM domain-containing protein.	ELAV-like protein; Belongs to the RRM elav family.	0.486
G1SFQ9_RABIT	ENSOCUP00000041756	ENSOCUP00000001369	ENSOCUP00000041756	RRM domain-containing protein.	RRM domain-containing protein.	0.520
G1SFQ9_RABIT	ERH	ENSOCUP00000001369	ENSOCUP00000003999	RRM domain-containing protein.	Enhancer of rudimentary homolog; May have a role in the cell cycle.	0.527