Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXB1Homeobox B1. (300 aa)    
Predicted Functional Partners:
PBX1
PBX homeobox 1.
    
 0.920
HOXD1
Homeobox D1.
  
0.899
PKNOX1
PBX/knotted 1 homeobox 1.
   
 0.870
HOXA1
Homeobox A1 isoform a (Predicted).
   
 0.869
U3KNY0_RABIT
Uncharacterized protein.
    
 0.854
PBX2
PBX homeobox 2.
    
 0.846
PBX3
PBX homeobox 3.
    
 0.786
PKNOX2
PBX/knotted 1 homeobox 2.
   
 0.745
PKNOX1-2
Uncharacterized protein.
   
 0.734
TBX6
T-box transcription factor 6.
   
 
 0.709
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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