RPAP2 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPAP2

RNA polymerase II associated protein 2. (608 aa)

Predicted Functional Partners:

RPRD1B

0.993

RPRD1A

0.988

RPRD2

0.987

GPN3

0.987

POLR2G

0.975

C12orf45

0.974

KIAA1328

0.974

MIPOL1

0.968

UXT

0.960

GPN1

0.954

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C12orf45	MIPOL1	ENSOCUP00000006018	ENSOCUP00000002780	Chromosome 12 open reading frame 45.	Mirror-image polydactyly 1.	0.461
C12orf45	RPAP2	ENSOCUP00000006018	ENSOCUP00000001552	Chromosome 12 open reading frame 45.	RNA polymerase II associated protein 2.	0.974
GPN1	GPN3	ENSOCUP00000011736	ENSOCUP00000010237	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.870
GPN1	POLR2G	ENSOCUP00000011736	ENSOCUP00000008180	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	RNA polymerase II subunit G.	0.787
GPN1	RPAP2	ENSOCUP00000011736	ENSOCUP00000001552	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	RNA polymerase II associated protein 2.	0.954
GPN1	RPRD1A	ENSOCUP00000011736	ENSOCUP00000006999	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	Regulation of nuclear pre-mRNA domain containing 1A.	0.859
GPN1	RPRD1B	ENSOCUP00000011736	ENSOCUP00000002992	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	Regulation of nuclear pre-mRNA domain containing 1B.	0.920
GPN1	RPRD2	ENSOCUP00000011736	ENSOCUP00000010114	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	Regulation of nuclear pre-mRNA domain containing 2.	0.757
GPN1	UXT	ENSOCUP00000011736	ENSOCUP00000009071	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	Ubiquitously expressed prefoldin like chaperone.	0.556
GPN3	GPN1	ENSOCUP00000010237	ENSOCUP00000011736	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.	0.870
GPN3	POLR2G	ENSOCUP00000010237	ENSOCUP00000008180	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RNA polymerase II subunit G.	0.933
GPN3	RPAP2	ENSOCUP00000010237	ENSOCUP00000001552	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	RNA polymerase II associated protein 2.	0.987
GPN3	RPRD1A	ENSOCUP00000010237	ENSOCUP00000006999	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Regulation of nuclear pre-mRNA domain containing 1A.	0.765
GPN3	RPRD1B	ENSOCUP00000010237	ENSOCUP00000002992	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Regulation of nuclear pre-mRNA domain containing 1B.	0.793
GPN3	UXT	ENSOCUP00000010237	ENSOCUP00000009071	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Ubiquitously expressed prefoldin like chaperone.	0.889
KIAA1328	MIPOL1	ENSOCUP00000041529	ENSOCUP00000002780	KIAA1328.	Mirror-image polydactyly 1.	0.974
KIAA1328	RPAP2	ENSOCUP00000041529	ENSOCUP00000001552	KIAA1328.	RNA polymerase II associated protein 2.	0.974
MIPOL1	C12orf45	ENSOCUP00000002780	ENSOCUP00000006018	Mirror-image polydactyly 1.	Chromosome 12 open reading frame 45.	0.461
MIPOL1	KIAA1328	ENSOCUP00000002780	ENSOCUP00000041529	Mirror-image polydactyly 1.	KIAA1328.	0.974
MIPOL1	RPAP2	ENSOCUP00000002780	ENSOCUP00000001552	Mirror-image polydactyly 1.	RNA polymerase II associated protein 2.	0.968