STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM180AFamily with sequence similarity 180 member A. (161 aa)    
Predicted Functional Partners:
SLC25A29
Solute carrier family 25 member 29; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.786
GCC2
GRIP and coiled-coil domain containing 2.
      
 0.734
PI15
Peptidase inhibitor 15; Belongs to the CRISP family.
      
 0.730
DUSP27
Dual specificity phosphatase 27, atypical; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.698
CMTM5
CKLF like MARVEL transmembrane domain containing 5.
      
 0.678
UCMA
Upper zone of growth plate and cartilage matrix associated.
      
 0.649
SCUBE3
Signal peptide, CUB domain and EGF like domain containing 3.
   
  
 0.601
DENND10
DENN domain containing 10.
      
 0.540
ITGBL1
Integrin subunit beta like 1.
   
  
 0.530
MMP9
Matrix metalloproteinase-9; Could play a role in bone osteoclastic resorption. Cleaves type IV and type V collagen into large C-terminal three quarter fragments and shorter N-terminal one quarter fragments (By similarity).
      
 0.435
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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