MAGOH protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MAGOH

Mago homolog, exon junction complex subunit. (146 aa)

Predicted Functional Partners:

RBM8A

0.999

UPF3B

0.997

CASC3

0.995

UPF3A

0.990

PYM1

0.983

UPF2

0.967

PNN

0.958

G1TZC2_RABIT

0.949

ENSOCUP00000032071

0.949

SRSF3

0.936

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASC3	ENSOCUP00000032071	ENSOCUP00000039915	ENSOCUP00000032071	CASC3 exon junction complex subunit.	RanBD1 domain-containing protein.	0.945
CASC3	G1TZC2_RABIT	ENSOCUP00000039915	ENSOCUP00000022444	CASC3 exon junction complex subunit.	Uncharacterized protein.	0.945
CASC3	MAGOH	ENSOCUP00000039915	ENSOCUP00000001618	CASC3 exon junction complex subunit.	Mago homolog, exon junction complex subunit.	0.995
CASC3	PNN	ENSOCUP00000039915	ENSOCUP00000001881	CASC3 exon junction complex subunit.	Pinin, desmosome associated protein.	0.873
CASC3	PYM1	ENSOCUP00000039915	ENSOCUP00000028286	CASC3 exon junction complex subunit.	PYM homolog 1, exon junction complex associated factor.	0.520
CASC3	RBM8A	ENSOCUP00000039915	ENSOCUP00000021603	CASC3 exon junction complex subunit.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
CASC3	SRSF3	ENSOCUP00000039915	ENSOCUP00000005776	CASC3 exon junction complex subunit.	Serine and arginine rich splicing factor 3.	0.719
CASC3	UPF2	ENSOCUP00000039915	ENSOCUP00000005394	CASC3 exon junction complex subunit.	UPF2 regulator of nonsense mediated mRNA decay.	0.954
CASC3	UPF3A	ENSOCUP00000039915	ENSOCUP00000007304	CASC3 exon junction complex subunit.	Smg4_UPF3 domain-containing protein.	0.919
CASC3	UPF3B	ENSOCUP00000039915	ENSOCUP00000008801	CASC3 exon junction complex subunit.	UPF3B regulator of nonsense mediated mRNA decay.	0.974
ENSOCUP00000032071	CASC3	ENSOCUP00000032071	ENSOCUP00000039915	RanBD1 domain-containing protein.	CASC3 exon junction complex subunit.	0.945
ENSOCUP00000032071	MAGOH	ENSOCUP00000032071	ENSOCUP00000001618	RanBD1 domain-containing protein.	Mago homolog, exon junction complex subunit.	0.949
ENSOCUP00000032071	RBM8A	ENSOCUP00000032071	ENSOCUP00000021603	RanBD1 domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.950
ENSOCUP00000032071	UPF3A	ENSOCUP00000032071	ENSOCUP00000007304	RanBD1 domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.941
ENSOCUP00000032071	UPF3B	ENSOCUP00000032071	ENSOCUP00000008801	RanBD1 domain-containing protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.941
G1TZC2_RABIT	CASC3	ENSOCUP00000022444	ENSOCUP00000039915	Uncharacterized protein.	CASC3 exon junction complex subunit.	0.945
G1TZC2_RABIT	MAGOH	ENSOCUP00000022444	ENSOCUP00000001618	Uncharacterized protein.	Mago homolog, exon junction complex subunit.	0.949
G1TZC2_RABIT	RBM8A	ENSOCUP00000022444	ENSOCUP00000021603	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.950
G1TZC2_RABIT	UPF3A	ENSOCUP00000022444	ENSOCUP00000007304	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.941
G1TZC2_RABIT	UPF3B	ENSOCUP00000022444	ENSOCUP00000008801	Uncharacterized protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.941