UBL3 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBL3

Ubiquitin-like protein. (117 aa)

Predicted Functional Partners:

NEDD8

0.827

SUMO2

0.778

SUMO1

0.776

G1TG12_RABIT

0.773

G1SQP5_RABIT

0.761

G1TM59_RABIT

0.760

G1TU65_RABIT

0.760

ENSOCUP00000041916

0.760

ATG12

0.748

ISG15

0.734

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG12	NEDD8	ENSOCUP00000037928	ENSOCUP00000002526	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity).	0.434
ATG12	UBL3	ENSOCUP00000037928	ENSOCUP00000001685	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Ubiquitin-like protein.	0.748
ENSOCUP00000041916	G1TG12_RABIT	ENSOCUP00000041916	ENSOCUP00000015860	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.606
ENSOCUP00000041916	ISG15	ENSOCUP00000041916	ENSOCUP00000029108	Small ubiquitin-related modifier.	ISG15 ubiquitin like modifier.	0.788
ENSOCUP00000041916	NEDD8	ENSOCUP00000041916	ENSOCUP00000002526	Small ubiquitin-related modifier.	NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity).	0.934
ENSOCUP00000041916	SUMO1	ENSOCUP00000041916	ENSOCUP00000033972	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.448
ENSOCUP00000041916	UBL3	ENSOCUP00000041916	ENSOCUP00000001685	Small ubiquitin-related modifier.	Ubiquitin-like protein.	0.760
G1SQP5_RABIT	G1TG12_RABIT	ENSOCUP00000005439	ENSOCUP00000015860	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.403
G1SQP5_RABIT	ISG15	ENSOCUP00000005439	ENSOCUP00000029108	Small ubiquitin-related modifier.	ISG15 ubiquitin like modifier.	0.778
G1SQP5_RABIT	NEDD8	ENSOCUP00000005439	ENSOCUP00000002526	Small ubiquitin-related modifier.	NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity).	0.934
G1SQP5_RABIT	SUMO1	ENSOCUP00000005439	ENSOCUP00000033972	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.424
G1SQP5_RABIT	UBL3	ENSOCUP00000005439	ENSOCUP00000001685	Small ubiquitin-related modifier.	Ubiquitin-like protein.	0.761
G1TG12_RABIT	ENSOCUP00000041916	ENSOCUP00000015860	ENSOCUP00000041916	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.606
G1TG12_RABIT	G1SQP5_RABIT	ENSOCUP00000015860	ENSOCUP00000005439	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.403
G1TG12_RABIT	ISG15	ENSOCUP00000015860	ENSOCUP00000029108	Small ubiquitin-related modifier.	ISG15 ubiquitin like modifier.	0.808
G1TG12_RABIT	NEDD8	ENSOCUP00000015860	ENSOCUP00000002526	Small ubiquitin-related modifier.	NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity).	0.928
G1TG12_RABIT	SUMO2	ENSOCUP00000015860	ENSOCUP00000025547	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.477
G1TG12_RABIT	UBL3	ENSOCUP00000015860	ENSOCUP00000001685	Small ubiquitin-related modifier.	Ubiquitin-like protein.	0.773
G1TM59_RABIT	ISG15	ENSOCUP00000018066	ENSOCUP00000029108	Small ubiquitin-related modifier.	ISG15 ubiquitin like modifier.	0.788
G1TM59_RABIT	NEDD8	ENSOCUP00000018066	ENSOCUP00000002526	Small ubiquitin-related modifier.	NEDD8; Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins (By similarity).	0.934