G1SGI9_RABIT protein (Oryctolagus cuniculus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

G1SGI9_RABIT

Uncharacterized protein. (358 aa)

Predicted Functional Partners:

ITGA10

0.909

ITGA11

0.880

ITGA7

0.869

ITGB6

0.869

ITGA1

0.866

ITGB4

0.866

ITGB5

0.865

ITGA2

0.865

ITGB3

0.865

ITGAV

0.862

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G1SGI9_RABIT	ITGA1	ENSOCUP00000001699	ENSOCUP00000009789	Uncharacterized protein.	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	0.866
G1SGI9_RABIT	ITGA10	ENSOCUP00000001699	ENSOCUP00000002643	Uncharacterized protein.	Integrin subunit alpha 10; Belongs to the integrin alpha chain family.	0.909
G1SGI9_RABIT	ITGA11	ENSOCUP00000001699	ENSOCUP00000015224	Uncharacterized protein.	Integrin subunit alpha 11; Belongs to the integrin alpha chain family.	0.880
G1SGI9_RABIT	ITGA2	ENSOCUP00000001699	ENSOCUP00000029512	Uncharacterized protein.	Integrin subunit alpha 2; Belongs to the integrin alpha chain family.	0.865
G1SGI9_RABIT	ITGA7	ENSOCUP00000001699	ENSOCUP00000028604	Uncharacterized protein.	Integrin subunit alpha 7; Belongs to the integrin alpha chain family.	0.869
G1SGI9_RABIT	ITGAV	ENSOCUP00000001699	ENSOCUP00000039361	Uncharacterized protein.	Integrin subunit alpha V; Belongs to the integrin alpha chain family.	0.862
G1SGI9_RABIT	ITGB3	ENSOCUP00000001699	ENSOCUP00000033109	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.865
G1SGI9_RABIT	ITGB4	ENSOCUP00000001699	ENSOCUP00000031031	Uncharacterized protein.	Integrin beta.	0.866
G1SGI9_RABIT	ITGB5	ENSOCUP00000001699	ENSOCUP00000012560	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.865
G1SGI9_RABIT	ITGB6	ENSOCUP00000001699	ENSOCUP00000029233	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.869
ITGA1	G1SGI9_RABIT	ENSOCUP00000009789	ENSOCUP00000001699	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Uncharacterized protein.	0.866
ITGA1	ITGA10	ENSOCUP00000009789	ENSOCUP00000002643	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin subunit alpha 10; Belongs to the integrin alpha chain family.	0.761
ITGA1	ITGA11	ENSOCUP00000009789	ENSOCUP00000015224	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin subunit alpha 11; Belongs to the integrin alpha chain family.	0.758
ITGA1	ITGA2	ENSOCUP00000009789	ENSOCUP00000029512	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin subunit alpha 2; Belongs to the integrin alpha chain family.	0.871
ITGA1	ITGA7	ENSOCUP00000009789	ENSOCUP00000028604	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin subunit alpha 7; Belongs to the integrin alpha chain family.	0.756
ITGA1	ITGAV	ENSOCUP00000009789	ENSOCUP00000039361	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin subunit alpha V; Belongs to the integrin alpha chain family.	0.894
ITGA1	ITGB3	ENSOCUP00000009789	ENSOCUP00000033109	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.983
ITGA1	ITGB4	ENSOCUP00000009789	ENSOCUP00000031031	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin beta.	0.975
ITGA1	ITGB5	ENSOCUP00000009789	ENSOCUP00000012560	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.980
ITGA1	ITGB6	ENSOCUP00000009789	ENSOCUP00000029233	Integrin subunit alpha 1; Belongs to the integrin alpha chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.974