STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF31Pre-mRNA processing factor 31. (462 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA processing factor 8.
   
 0.999
PRPF4
Pre-mRNA processing factor 4.
   
 0.999
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
PRPF3
Pre-mRNA processing factor 3.
   
 0.999
PRPF6
Pre-mRNA processing factor 6.
   
 0.999
SART1
Uncharacterized protein.
   
 0.998
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.998
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.997
MFAP1
Microfibrillar-associated protein 1 (Predicted).
   
 0.995
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.991
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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