CBLN3 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBLN3

Cerebellin 3 precursor. (205 aa)

Predicted Functional Partners:

NYNRIN

0.773

IGDCC3

0.702

MTMR7

0.691

GRID2

0.675

FAM107B

0.671

BEAN1

0.645

GABRA6

0.640

IGDCC4

0.616

DCUN1D3

0.616

C1QTNF7

0.567

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BEAN1	CBLN3	ENSOCUP00000021050	ENSOCUP00000001846	Uncharacterized protein.	Cerebellin 3 precursor.	0.645
BEAN1	MTMR7	ENSOCUP00000021050	ENSOCUP00000007230	Uncharacterized protein.	Myotubularin related protein 7.	0.679
C1QTNF7	CBLN3	ENSOCUP00000014222	ENSOCUP00000001846	C1q and TNF related 7.	Cerebellin 3 precursor.	0.567
CBLN3	BEAN1	ENSOCUP00000001846	ENSOCUP00000021050	Cerebellin 3 precursor.	Uncharacterized protein.	0.645
CBLN3	C1QTNF7	ENSOCUP00000001846	ENSOCUP00000014222	Cerebellin 3 precursor.	C1q and TNF related 7.	0.567
CBLN3	DCUN1D3	ENSOCUP00000001846	ENSOCUP00000016804	Cerebellin 3 precursor.	DCN1-like protein.	0.616
CBLN3	FAM107B	ENSOCUP00000001846	ENSOCUP00000044963	Cerebellin 3 precursor.	Family with sequence similarity 107 member B.	0.671
CBLN3	GABRA6	ENSOCUP00000001846	ENSOCUP00000012795	Cerebellin 3 precursor.	Gamma-aminobutyric acid type A receptor alpha6 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.640
CBLN3	GRID2	ENSOCUP00000001846	ENSOCUP00000009838	Cerebellin 3 precursor.	Glutamate ionotropic receptor delta type subunit 2.	0.675
CBLN3	IGDCC3	ENSOCUP00000001846	ENSOCUP00000000274	Cerebellin 3 precursor.	Immunoglobulin superfamily DCC subclass member 3.	0.702
CBLN3	IGDCC4	ENSOCUP00000001846	ENSOCUP00000000275	Cerebellin 3 precursor.	Immunoglobulin superfamily DCC subclass member 4.	0.616
CBLN3	MTMR7	ENSOCUP00000001846	ENSOCUP00000007230	Cerebellin 3 precursor.	Myotubularin related protein 7.	0.691
CBLN3	NYNRIN	ENSOCUP00000001846	ENSOCUP00000013029	Cerebellin 3 precursor.	NYN domain and retroviral integrase containing.	0.773
DCUN1D3	CBLN3	ENSOCUP00000016804	ENSOCUP00000001846	DCN1-like protein.	Cerebellin 3 precursor.	0.616
DCUN1D3	FAM107B	ENSOCUP00000016804	ENSOCUP00000044963	DCN1-like protein.	Family with sequence similarity 107 member B.	0.655
FAM107B	CBLN3	ENSOCUP00000044963	ENSOCUP00000001846	Family with sequence similarity 107 member B.	Cerebellin 3 precursor.	0.671
FAM107B	DCUN1D3	ENSOCUP00000044963	ENSOCUP00000016804	Family with sequence similarity 107 member B.	DCN1-like protein.	0.655
GABRA6	CBLN3	ENSOCUP00000012795	ENSOCUP00000001846	Gamma-aminobutyric acid type A receptor alpha6 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Cerebellin 3 precursor.	0.640
GRID2	CBLN3	ENSOCUP00000009838	ENSOCUP00000001846	Glutamate ionotropic receptor delta type subunit 2.	Cerebellin 3 precursor.	0.675
GRID2	IGDCC3	ENSOCUP00000009838	ENSOCUP00000000274	Glutamate ionotropic receptor delta type subunit 2.	Immunoglobulin superfamily DCC subclass member 3.	0.459