Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (977 aa)    
Predicted Functional Partners:
VPS53
VPS53 subunit of GARP complex.
   
 0.999
VPS52
VPS52 subunit of GARP complex.
    
 0.998
VPS51
VPS51 subunit of GARP complex.
    
 0.997
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.988
STX16-NPEPL1
STX16-NPEPL1 readthrough (NMD candidate); Belongs to the syntaxin family.
    
 0.946
G1SDF3_RABIT
Uncharacterized protein.
    
 
 0.922
COG4
Component of oligomeric golgi complex 4.
    
 0.889
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.882
COG1
Component of oligomeric golgi complex 1.
     
 0.877
COG7
Component of oligomeric golgi complex 7.
     
 0.867
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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