STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (977 aa)    
Predicted Functional Partners:
VPS51
VPS51 subunit of GARP complex.
   
 0.999
VPS52
VPS52 subunit of GARP complex.
    
 0.999
VPS53
VPS53 subunit of GARP complex.
   
 0.999
STX16-NPEPL1
STX16-NPEPL1 readthrough (NMD candidate); Belongs to the syntaxin family.
    
 0.975
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.967
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.953
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.940
COG5
Component of oligomeric golgi complex 5.
     
 0.913
COG2
Component of oligomeric golgi complex 2.
     
 0.912
COG4
Component of oligomeric golgi complex 4.
    
 0.908
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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