Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DHX16DEAH-box helicase 16. (1044 aa)    
Predicted Functional Partners:
GPKOW
G-patch domain and KOW motifs.
   
 0.997
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.977
SF3B2
Splicing factor 3b subunit 2.
   
 0.971
CWC27
CWC27 spliceosome associated cyclophilin.
   
 0.971
RNF113A
Ring finger protein 113A.
   
 0.968
DHX38
DEAH-box helicase 38.
  
0.954
XAB2
XPA binding protein 2.
   
 0.951
BUD13
BUD13 homolog.
   
 0.950
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.949
SF3A3
Splicing factor 3a subunit 3.
   
 0.935
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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