GPRASP1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GPRASP1

G protein-coupled receptor associated sorting protein 1. (1372 aa)

Predicted Functional Partners:

TCF25

0.710

SLC25A14

0.709

TENT5D

0.697

PTGR2

0.674

PFDN1

0.650

PIFO

0.588

ATG16L2

0.587

PXMP2

0.541

NUDT9

0.533

OPRD1

0.510

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG16L2	GPRASP1	ENSOCUP00000026498	ENSOCUP00000001883	Autophagy related 16 like 2.	G protein-coupled receptor associated sorting protein 1.	0.587
ATG16L2	PTGR2	ENSOCUP00000026498	ENSOCUP00000005865	Autophagy related 16 like 2.	Uncharacterized protein.	0.707
ATG16L2	SLC25A14	ENSOCUP00000026498	ENSOCUP00000034064	Autophagy related 16 like 2.	Solute carrier family 25 member 14; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.524
ATG16L2	TENT5D	ENSOCUP00000026498	ENSOCUP00000001176	Autophagy related 16 like 2.	Terminal nucleotidyltransferase 5D.	0.554
GPRASP1	ATG16L2	ENSOCUP00000001883	ENSOCUP00000026498	G protein-coupled receptor associated sorting protein 1.	Autophagy related 16 like 2.	0.587
GPRASP1	NUDT9	ENSOCUP00000001883	ENSOCUP00000002309	G protein-coupled receptor associated sorting protein 1.	Nudix hydrolase 9.	0.533
GPRASP1	OPRD1	ENSOCUP00000001883	ENSOCUP00000000893	G protein-coupled receptor associated sorting protein 1.	Opioid receptor delta 1; Belongs to the G-protein coupled receptor 1 family.	0.510
GPRASP1	PFDN1	ENSOCUP00000001883	ENSOCUP00000008135	G protein-coupled receptor associated sorting protein 1.	Prefoldin subunit 1.	0.650
GPRASP1	PIFO	ENSOCUP00000001883	ENSOCUP00000035985	G protein-coupled receptor associated sorting protein 1.	Primary cilia formation.	0.588
GPRASP1	PTGR2	ENSOCUP00000001883	ENSOCUP00000005865	G protein-coupled receptor associated sorting protein 1.	Uncharacterized protein.	0.674
GPRASP1	PXMP2	ENSOCUP00000001883	ENSOCUP00000015259	G protein-coupled receptor associated sorting protein 1.	Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.541
GPRASP1	SLC25A14	ENSOCUP00000001883	ENSOCUP00000034064	G protein-coupled receptor associated sorting protein 1.	Solute carrier family 25 member 14; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.709
GPRASP1	TCF25	ENSOCUP00000001883	ENSOCUP00000011704	G protein-coupled receptor associated sorting protein 1.	Transcription factor 25.	0.710
GPRASP1	TENT5D	ENSOCUP00000001883	ENSOCUP00000001176	G protein-coupled receptor associated sorting protein 1.	Terminal nucleotidyltransferase 5D.	0.697
NUDT9	GPRASP1	ENSOCUP00000002309	ENSOCUP00000001883	Nudix hydrolase 9.	G protein-coupled receptor associated sorting protein 1.	0.533
NUDT9	PXMP2	ENSOCUP00000002309	ENSOCUP00000015259	Nudix hydrolase 9.	Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.410
OPRD1	GPRASP1	ENSOCUP00000000893	ENSOCUP00000001883	Opioid receptor delta 1; Belongs to the G-protein coupled receptor 1 family.	G protein-coupled receptor associated sorting protein 1.	0.510
PFDN1	GPRASP1	ENSOCUP00000008135	ENSOCUP00000001883	Prefoldin subunit 1.	G protein-coupled receptor associated sorting protein 1.	0.650
PFDN1	PIFO	ENSOCUP00000008135	ENSOCUP00000035985	Prefoldin subunit 1.	Primary cilia formation.	0.636
PIFO	GPRASP1	ENSOCUP00000035985	ENSOCUP00000001883	Primary cilia formation.	G protein-coupled receptor associated sorting protein 1.	0.588