LOC100359324 protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100359324

ACB domain-containing protein. (87 aa)

Predicted Functional Partners:

DBI

0.904

CBY2

0.704

PDCL2

0.699

DNAJB3

0.695

CLGN

0.650

TSN

0.650

SPA17

0.649

PPIC

0.612

DMC1

0.599

TATDN1

0.597

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBY2	CLGN	ENSOCUP00000012062	ENSOCUP00000005703	Spermatid associated.	Calmegin.	0.549
CBY2	DMC1	ENSOCUP00000012062	ENSOCUP00000004316	Spermatid associated.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.449
CBY2	LOC100359324	ENSOCUP00000012062	ENSOCUP00000001905	Spermatid associated.	ACB domain-containing protein.	0.704
CLGN	CBY2	ENSOCUP00000005703	ENSOCUP00000012062	Calmegin.	Spermatid associated.	0.549
CLGN	LOC100359324	ENSOCUP00000005703	ENSOCUP00000001905	Calmegin.	ACB domain-containing protein.	0.650
CLGN	SPA17	ENSOCUP00000005703	ENSOCUP00000042432	Calmegin.	Sperm surface protein Sp17; Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.	0.497
DBI	LOC100359324	ENSOCUP00000003937	ENSOCUP00000001905	Acyl-CoA-binding protein; Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters. It is also able to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor (By similarity).	ACB domain-containing protein.	0.904
DMC1	CBY2	ENSOCUP00000004316	ENSOCUP00000012062	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Spermatid associated.	0.449
DMC1	LOC100359324	ENSOCUP00000004316	ENSOCUP00000001905	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	ACB domain-containing protein.	0.599
DNAJB3	LOC100359324	ENSOCUP00000018754	ENSOCUP00000001905	J domain-containing protein.	ACB domain-containing protein.	0.695
DNAJB3	PDCL2	ENSOCUP00000018754	ENSOCUP00000006617	J domain-containing protein.	Phosducin like 2.	0.529
DNAJB3	PPIC	ENSOCUP00000018754	ENSOCUP00000033414	J domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.458
DNAJB3	SPA17	ENSOCUP00000018754	ENSOCUP00000042432	J domain-containing protein.	Sperm surface protein Sp17; Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.	0.561
LOC100359324	CBY2	ENSOCUP00000001905	ENSOCUP00000012062	ACB domain-containing protein.	Spermatid associated.	0.704
LOC100359324	CLGN	ENSOCUP00000001905	ENSOCUP00000005703	ACB domain-containing protein.	Calmegin.	0.650
LOC100359324	DBI	ENSOCUP00000001905	ENSOCUP00000003937	ACB domain-containing protein.	Acyl-CoA-binding protein; Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters. It is also able to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor (By similarity).	0.904
LOC100359324	DMC1	ENSOCUP00000001905	ENSOCUP00000004316	ACB domain-containing protein.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.599
LOC100359324	DNAJB3	ENSOCUP00000001905	ENSOCUP00000018754	ACB domain-containing protein.	J domain-containing protein.	0.695
LOC100359324	PDCL2	ENSOCUP00000001905	ENSOCUP00000006617	ACB domain-containing protein.	Phosducin like 2.	0.699
LOC100359324	PPIC	ENSOCUP00000001905	ENSOCUP00000033414	ACB domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.612