Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRM3Mitochondrial rRNA methyltransferase 3. (413 aa)    
Predicted Functional Partners:
DDX28
DEAD-box helicase 28.
   
 
 0.936
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.917
GTPBP10
GTP binding protein 10.
  
 
 0.867
RPUSD4
RNA pseudouridine synthase D4.
  
 
 0.860
MRM2
FtsJ domain-containing protein.
  
  
 0.834
MRPS30
Mitochondrial ribosomal protein S30.
   
 
 0.802
MRPL39
Mitochondrial ribosomal protein L39.
  
 
 0.802
MRM1
Mitochondrial rRNA methyltransferase 1.
   
 
 0.797
MRPL58
RF_PROK_I domain-containing protein.
    
 
 0.790
MRPL13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.786
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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