STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4AUbiquitination factor E4A. (1073 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.925
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.902
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.891
YOD1
YOD1 deubiquitinase.
   
 
 0.885
UBL7
Ubiquitin-like domain-containing protein.
   
 0.845
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.823
UBXN4
UBX domain protein 4.
    
 
 0.740
UBQLN2
Ubiquilin 2.
   
 0.736
NSFL1C
NSFL1 cofactor.
    
 
 0.729
UBXN2B
UBX domain protein 2B.
    
 
 0.729
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.