Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXD4Homeobox D4. (242 aa)    
Predicted Functional Partners:
HOXD3
Homeobox D3.
  
  
0.951
HOXA4
Homeobox domain-containing protein.
  
  
0.919
HOXA7
Homeobox domain-containing protein.
   
 
0.804
HOXB6
Homeobox B6.
   
 
0.776
HOXC4
Homeobox C4.
   
 
 0.745
HOXC6
Homeobox C6.
   
 
0.721
HOXB5
Homeobox B5.
   
 
 0.672
ANKRD17
Ankyrin repeat domain 17.
    
   0.571
RARB
Retinoic acid receptor beta.
    
 0.560
HOXC8
Homeobox C8.
   
  
0.534
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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