SBNO1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SBNO1

Strawberry notch homolog 1. (1452 aa)

Predicted Functional Partners:

MACO1

0.695

DUS4L

0.679

RIF1

0.657

ZNF345

0.649

TTC26

0.631

LTN1

0.612

RAP1GDS1

0.598

PDS5A

0.589

SOX5

0.588

BTAF1

0.578

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTAF1	LTN1	ENSOCUP00000042823	ENSOCUP00000046370	B-TFIID TATA-box binding protein associated factor 1.	Listerin E3 ubiquitin protein ligase 1.	0.508
BTAF1	PDS5A	ENSOCUP00000042823	ENSOCUP00000043564	B-TFIID TATA-box binding protein associated factor 1.	PDS5 cohesin associated factor A.	0.559
BTAF1	RAP1GDS1	ENSOCUP00000042823	ENSOCUP00000014214	B-TFIID TATA-box binding protein associated factor 1.	Rap1 GTPase-GDP dissociation stimulator 1.	0.478
BTAF1	RIF1	ENSOCUP00000042823	ENSOCUP00000022283	B-TFIID TATA-box binding protein associated factor 1.	Replication timing regulatory factor 1.	0.494
BTAF1	SBNO1	ENSOCUP00000042823	ENSOCUP00000002120	B-TFIID TATA-box binding protein associated factor 1.	Strawberry notch homolog 1.	0.578
DUS4L	SBNO1	ENSOCUP00000010997	ENSOCUP00000002120	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	Strawberry notch homolog 1.	0.679
DUS4L	ZNF345	ENSOCUP00000010997	ENSOCUP00000026663	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.	Zinc finger protein 345.	0.682
LTN1	BTAF1	ENSOCUP00000046370	ENSOCUP00000042823	Listerin E3 ubiquitin protein ligase 1.	B-TFIID TATA-box binding protein associated factor 1.	0.508
LTN1	SBNO1	ENSOCUP00000046370	ENSOCUP00000002120	Listerin E3 ubiquitin protein ligase 1.	Strawberry notch homolog 1.	0.612
MACO1	SBNO1	ENSOCUP00000001570	ENSOCUP00000002120	Macoilin 1.	Strawberry notch homolog 1.	0.695
PDS5A	BTAF1	ENSOCUP00000043564	ENSOCUP00000042823	PDS5 cohesin associated factor A.	B-TFIID TATA-box binding protein associated factor 1.	0.559
PDS5A	RIF1	ENSOCUP00000043564	ENSOCUP00000022283	PDS5 cohesin associated factor A.	Replication timing regulatory factor 1.	0.506
PDS5A	SBNO1	ENSOCUP00000043564	ENSOCUP00000002120	PDS5 cohesin associated factor A.	Strawberry notch homolog 1.	0.589
RAP1GDS1	BTAF1	ENSOCUP00000014214	ENSOCUP00000042823	Rap1 GTPase-GDP dissociation stimulator 1.	B-TFIID TATA-box binding protein associated factor 1.	0.478
RAP1GDS1	SBNO1	ENSOCUP00000014214	ENSOCUP00000002120	Rap1 GTPase-GDP dissociation stimulator 1.	Strawberry notch homolog 1.	0.598
RAP1GDS1	TTC26	ENSOCUP00000014214	ENSOCUP00000015379	Rap1 GTPase-GDP dissociation stimulator 1.	Tetratricopeptide repeat domain 26.	0.565
RIF1	BTAF1	ENSOCUP00000022283	ENSOCUP00000042823	Replication timing regulatory factor 1.	B-TFIID TATA-box binding protein associated factor 1.	0.494
RIF1	PDS5A	ENSOCUP00000022283	ENSOCUP00000043564	Replication timing regulatory factor 1.	PDS5 cohesin associated factor A.	0.506
RIF1	SBNO1	ENSOCUP00000022283	ENSOCUP00000002120	Replication timing regulatory factor 1.	Strawberry notch homolog 1.	0.657
SBNO1	BTAF1	ENSOCUP00000002120	ENSOCUP00000042823	Strawberry notch homolog 1.	B-TFIID TATA-box binding protein associated factor 1.	0.578