STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RLIMRing finger protein, LIM domain interacting. (612 aa)    
Predicted Functional Partners:
NEXMIF
Neurite extension and migration factor.
 
    
 0.854
UBE2D2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.853
ENSOCUP00000044498
Ribosomal_L40e domain-containing protein.
    
 0.830
ENSOCUP00000038446
Ubiquitin-like domain-containing protein.
    
 0.740
G1SIQ0_RABIT
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.724
UBE2D1
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.724
G1SK22_RABIT
Ubiquitin-like domain-containing protein.
    
 0.719
G1TZL0_RABIT
Ubiquitin-like domain-containing protein.
    
 0.719
LOC100343047
Ubiquitin-like domain-containing protein.
    
 0.690
ENSOCUP00000038813
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.656
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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