SLX4IP protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLX4IP

SLX4 interacting protein. (399 aa)

Predicted Functional Partners:

SLX4

0.866

PCED1A

0.832

RAD54L2

0.812

ESF1

0.782

LEKR1

0.746

BPIFB6

0.699

ATRN

0.697

COMMD7

0.651

PLEKHG4

0.650

SMARCAL1

0.577

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATRN	ESF1	ENSOCUP00000010899	ENSOCUP00000004698	Attractin.	ESF1 nucleolar pre-rRNA processing protein homolog.	0.468
ATRN	PCED1A	ENSOCUP00000010899	ENSOCUP00000012840	Attractin.	PC-esterase domain containing 1A.	0.735
ATRN	SLX4IP	ENSOCUP00000010899	ENSOCUP00000002498	Attractin.	SLX4 interacting protein.	0.697
BPIFB6	COMMD7	ENSOCUP00000005893	ENSOCUP00000012324	BPI fold containing family B member 6.	COMM domain-containing protein.	0.726
BPIFB6	SLX4IP	ENSOCUP00000005893	ENSOCUP00000002498	BPI fold containing family B member 6.	SLX4 interacting protein.	0.699
COMMD7	BPIFB6	ENSOCUP00000012324	ENSOCUP00000005893	COMM domain-containing protein.	BPI fold containing family B member 6.	0.726
COMMD7	PCED1A	ENSOCUP00000012324	ENSOCUP00000012840	COMM domain-containing protein.	PC-esterase domain containing 1A.	0.574
COMMD7	SLX4IP	ENSOCUP00000012324	ENSOCUP00000002498	COMM domain-containing protein.	SLX4 interacting protein.	0.651
ESF1	ATRN	ENSOCUP00000004698	ENSOCUP00000010899	ESF1 nucleolar pre-rRNA processing protein homolog.	Attractin.	0.468
ESF1	PCED1A	ENSOCUP00000004698	ENSOCUP00000012840	ESF1 nucleolar pre-rRNA processing protein homolog.	PC-esterase domain containing 1A.	0.773
ESF1	SLX4IP	ENSOCUP00000004698	ENSOCUP00000002498	ESF1 nucleolar pre-rRNA processing protein homolog.	SLX4 interacting protein.	0.782
LEKR1	PLEKHG4	ENSOCUP00000009526	ENSOCUP00000032510	Uncharacterized protein.	Pleckstrin homology and RhoGEF domain containing G4.	0.798
LEKR1	SLX4IP	ENSOCUP00000009526	ENSOCUP00000002498	Uncharacterized protein.	SLX4 interacting protein.	0.746
PCED1A	ATRN	ENSOCUP00000012840	ENSOCUP00000010899	PC-esterase domain containing 1A.	Attractin.	0.735
PCED1A	COMMD7	ENSOCUP00000012840	ENSOCUP00000012324	PC-esterase domain containing 1A.	COMM domain-containing protein.	0.574
PCED1A	ESF1	ENSOCUP00000012840	ENSOCUP00000004698	PC-esterase domain containing 1A.	ESF1 nucleolar pre-rRNA processing protein homolog.	0.773
PCED1A	SLX4IP	ENSOCUP00000012840	ENSOCUP00000002498	PC-esterase domain containing 1A.	SLX4 interacting protein.	0.832
PLEKHG4	LEKR1	ENSOCUP00000032510	ENSOCUP00000009526	Pleckstrin homology and RhoGEF domain containing G4.	Uncharacterized protein.	0.798
PLEKHG4	SLX4IP	ENSOCUP00000032510	ENSOCUP00000002498	Pleckstrin homology and RhoGEF domain containing G4.	SLX4 interacting protein.	0.650
RAD54L2	SLX4IP	ENSOCUP00000015103	ENSOCUP00000002498	RAD54 like 2.	SLX4 interacting protein.	0.812