RAB11FIP3 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RAB11FIP3

RAB11 family interacting protein 3. (455 aa)

Predicted Functional Partners:

RAB11B

0.985

RAB11A

0.936

RAB3IP

0.934

RAB11FIP4

0.934

RAB11FIP2

0.901

RAB11FIP5

0.882

RAB25

0.857

ASAP1

0.845

RAB11FIP1

0.841

GSC

0.817

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASAP1	RAB11A	ENSOCUP00000040736	ENSOCUP00000012687	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	0.549
ASAP1	RAB11B	ENSOCUP00000040736	ENSOCUP00000027452	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	0.741
ASAP1	RAB11FIP3	ENSOCUP00000040736	ENSOCUP00000002747	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	RAB11 family interacting protein 3.	0.845
ASAP1	RAB11FIP4	ENSOCUP00000040736	ENSOCUP00000046245	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	RAB11 family interacting protein 4.	0.493
ASAP1	RAB3IP	ENSOCUP00000040736	ENSOCUP00000037245	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	RAB3A interacting protein.	0.507
GSC	RAB11FIP3	ENSOCUP00000020884	ENSOCUP00000002747	Goosecoid homeobox.	RAB11 family interacting protein 3.	0.817
GSC	RAB11FIP4	ENSOCUP00000020884	ENSOCUP00000046245	Goosecoid homeobox.	RAB11 family interacting protein 4.	0.818
RAB11A	ASAP1	ENSOCUP00000012687	ENSOCUP00000040736	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	0.549
RAB11A	RAB11FIP1	ENSOCUP00000012687	ENSOCUP00000003889	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	FIP-RBD domain-containing protein.	0.929
RAB11A	RAB11FIP2	ENSOCUP00000012687	ENSOCUP00000017247	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	RAB11 family interacting protein 2.	0.961
RAB11A	RAB11FIP3	ENSOCUP00000012687	ENSOCUP00000002747	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	RAB11 family interacting protein 3.	0.936
RAB11A	RAB11FIP4	ENSOCUP00000012687	ENSOCUP00000046245	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	RAB11 family interacting protein 4.	0.914
RAB11A	RAB11FIP5	ENSOCUP00000012687	ENSOCUP00000038217	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	Uncharacterized protein.	0.696
RAB11A	RAB3IP	ENSOCUP00000012687	ENSOCUP00000037245	Oryctolagus cuniculus RAB11A, member RAS oncogene family (RAB11A), mRNA.	RAB3A interacting protein.	0.883
RAB11B	ASAP1	ENSOCUP00000027452	ENSOCUP00000040736	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1.	0.741
RAB11B	RAB11FIP1	ENSOCUP00000027452	ENSOCUP00000003889	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	FIP-RBD domain-containing protein.	0.995
RAB11B	RAB11FIP2	ENSOCUP00000027452	ENSOCUP00000017247	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	RAB11 family interacting protein 2.	0.999
RAB11B	RAB11FIP3	ENSOCUP00000027452	ENSOCUP00000002747	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	RAB11 family interacting protein 3.	0.985
RAB11B	RAB11FIP4	ENSOCUP00000027452	ENSOCUP00000046245	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	RAB11 family interacting protein 4.	0.951
RAB11B	RAB11FIP5	ENSOCUP00000027452	ENSOCUP00000038217	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	Uncharacterized protein.	0.991