STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLTMSAFB like transcription modulator. (990 aa)    
Predicted Functional Partners:
PRPF4B
Pre-mRNA processing factor 4B.
   
    0.664
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
    0.558
PNN
Pinin, desmosome associated protein.
   
    0.516
PNISR
PNN interacting serine and arginine rich protein.
   
 
 0.501
CTBP2
C-terminal binding protein 2.
     
 0.466
ENSOCUP00000044231
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.466
U2SURP
U2 snRNP associated SURP domain containing.
   
    0.429
PCLO
Uncharacterized protein.
   
 0.426
G1SFT0_RABIT
C2 domain-containing protein.
   
 0.419
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
   
  
 0.418
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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