STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR9C7Short chain dehydrogenase/reductase family 9C member 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (313 aa)    
Predicted Functional Partners:
PNPLA1
Patatin like phospholipase domain containing 1.
   
  
 0.762
CYP4F22
Cytochrome P450 family 4 subfamily F member 22; Belongs to the cytochrome P450 family.
   
 
 0.743
LIPN
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
   
  
 0.701
NIPAL4
NIPA like domain containing 4.
   
  
 0.700
ESD
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
      
 0.599
ABCA12
ATP binding cassette subfamily A member 12.
   
  
 0.595
SULT2B1
Sulfotransferase; Belongs to the sulfotransferase 1 family.
   
  
 0.556
ABHD5
Abhydrolase domain containing 5.
   
  
 0.555
TGM1
Protein-glutamine gamma-glutamyltransferase K; Catalyzes the cross-linking of proteins and the conjugation of polyamines to proteins. Responsible for cross-linking epidermal proteins during formation of the stratum corneum. Involved in cell proliferation (By similarity).
      
 0.546
CASP14
Caspase 14; Belongs to the peptidase C14A family.
   
  
 0.541
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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