CGNL1 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CGNL1

Cingulin like 1. (1299 aa)

Predicted Functional Partners:

ARHGEF2

0.970

TRAPPC1

0.821

TRAPPC8

0.809

TRAPPC5

0.809

USO1

0.730

TRAPPC4

0.712

ENSOCUP00000033452

0.712

TRAPPC6B

0.702

TRAPPC6A

0.702

G1TL88_RABIT

0.696

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGEF2	CGNL1	ENSOCUP00000038433	ENSOCUP00000003157	Rho/Rac guanine nucleotide exchange factor 2.	Cingulin like 1.	0.970
CGNL1	ARHGEF2	ENSOCUP00000003157	ENSOCUP00000038433	Cingulin like 1.	Rho/Rac guanine nucleotide exchange factor 2.	0.970
CGNL1	ENSOCUP00000033452	ENSOCUP00000003157	ENSOCUP00000033452	Cingulin like 1.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.712
CGNL1	G1TL88_RABIT	ENSOCUP00000003157	ENSOCUP00000017734	Cingulin like 1.	Uncharacterized protein.	0.696
CGNL1	TRAPPC1	ENSOCUP00000003157	ENSOCUP00000014889	Cingulin like 1.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.821
CGNL1	TRAPPC4	ENSOCUP00000003157	ENSOCUP00000014830	Cingulin like 1.	Uncharacterized protein.	0.712
CGNL1	TRAPPC5	ENSOCUP00000003157	ENSOCUP00000030298	Cingulin like 1.	Trafficking protein particle complex 5.	0.809
CGNL1	TRAPPC6A	ENSOCUP00000003157	ENSOCUP00000038308	Cingulin like 1.	Uncharacterized protein.	0.702
CGNL1	TRAPPC6B	ENSOCUP00000003157	ENSOCUP00000026855	Cingulin like 1.	Trafficking protein particle complex 6B.	0.702
CGNL1	TRAPPC8	ENSOCUP00000003157	ENSOCUP00000011453	Cingulin like 1.	Trafficking protein particle complex 8.	0.809
CGNL1	USO1	ENSOCUP00000003157	ENSOCUP00000032711	Cingulin like 1.	USO1 vesicle transport factor.	0.730
ENSOCUP00000033452	CGNL1	ENSOCUP00000033452	ENSOCUP00000003157	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Cingulin like 1.	0.712
ENSOCUP00000033452	G1TL88_RABIT	ENSOCUP00000033452	ENSOCUP00000017734	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.898
ENSOCUP00000033452	TRAPPC1	ENSOCUP00000033452	ENSOCUP00000014889	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.977
ENSOCUP00000033452	TRAPPC5	ENSOCUP00000033452	ENSOCUP00000030298	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex 5.	0.974
ENSOCUP00000033452	TRAPPC6A	ENSOCUP00000033452	ENSOCUP00000038308	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.908
ENSOCUP00000033452	TRAPPC6B	ENSOCUP00000033452	ENSOCUP00000026855	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex 6B.	0.908
ENSOCUP00000033452	TRAPPC8	ENSOCUP00000033452	ENSOCUP00000011453	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex 8.	0.973
G1TL88_RABIT	CGNL1	ENSOCUP00000017734	ENSOCUP00000003157	Uncharacterized protein.	Cingulin like 1.	0.696
G1TL88_RABIT	ENSOCUP00000033452	ENSOCUP00000017734	ENSOCUP00000033452	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.898