CBLIF protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBLIF

Cobalamin binding intrinsic factor. (417 aa)

Predicted Functional Partners:

TCN1

0.906

CUBN

0.895

CD320

0.817

GAST

0.679

CAPN8

0.600

PGA5

0.592

BHLHA15

0.574

ATP4B

0.504

ATP4A

0.449

HDC

0.420

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP4A	ATP4B	ENSOCUP00000024135	ENSOCUP00000021394	Potassium-transporting ATPase alpha chain 1; Catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. Responsible for acid production in the stomach; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	0.999
ATP4A	CBLIF	ENSOCUP00000024135	ENSOCUP00000003161	Potassium-transporting ATPase alpha chain 1; Catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. Responsible for acid production in the stomach; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.	Cobalamin binding intrinsic factor.	0.449
ATP4A	GAST	ENSOCUP00000024135	ENSOCUP00000019850	Potassium-transporting ATPase alpha chain 1; Catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. Responsible for acid production in the stomach; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.	Gastrin.	0.821
ATP4B	ATP4A	ENSOCUP00000021394	ENSOCUP00000024135	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	Potassium-transporting ATPase alpha chain 1; Catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. Responsible for acid production in the stomach; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.	0.999
ATP4B	CAPN8	ENSOCUP00000021394	ENSOCUP00000007097	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	Calpain 8; Belongs to the peptidase C2 family.	0.547
ATP4B	CBLIF	ENSOCUP00000021394	ENSOCUP00000003161	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	Cobalamin binding intrinsic factor.	0.504
ATP4B	GAST	ENSOCUP00000021394	ENSOCUP00000019850	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	Gastrin.	0.584
ATP4B	TCN1	ENSOCUP00000021394	ENSOCUP00000013557	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	Transcobalamin 1.	0.465
BHLHA15	CBLIF	ENSOCUP00000023094	ENSOCUP00000003161	Basic helix-loop-helix family member a15.	Cobalamin binding intrinsic factor.	0.574
BHLHA15	TCN1	ENSOCUP00000023094	ENSOCUP00000013557	Basic helix-loop-helix family member a15.	Transcobalamin 1.	0.574
CAPN8	ATP4B	ENSOCUP00000007097	ENSOCUP00000021394	Calpain 8; Belongs to the peptidase C2 family.	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	0.547
CAPN8	CBLIF	ENSOCUP00000007097	ENSOCUP00000003161	Calpain 8; Belongs to the peptidase C2 family.	Cobalamin binding intrinsic factor.	0.600
CAPN8	HDC	ENSOCUP00000007097	ENSOCUP00000014477	Calpain 8; Belongs to the peptidase C2 family.	Histidine decarboxylase.	0.461
CAPN8	TCN1	ENSOCUP00000007097	ENSOCUP00000013557	Calpain 8; Belongs to the peptidase C2 family.	Transcobalamin 1.	0.546
CBLIF	ATP4A	ENSOCUP00000003161	ENSOCUP00000024135	Cobalamin binding intrinsic factor.	Potassium-transporting ATPase alpha chain 1; Catalyzes the hydrolysis of ATP coupled with the exchange of H(+) and K(+) ions across the plasma membrane. Responsible for acid production in the stomach; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.	0.449
CBLIF	ATP4B	ENSOCUP00000003161	ENSOCUP00000021394	Cobalamin binding intrinsic factor.	Potassium-transporting ATPase subunit beta; Required for stabilization and maturation of the catalytic proton pump alpha subunit and may also involved in cell adhesion and establishing epithelial cell polarity.	0.504
CBLIF	BHLHA15	ENSOCUP00000003161	ENSOCUP00000023094	Cobalamin binding intrinsic factor.	Basic helix-loop-helix family member a15.	0.574
CBLIF	CAPN8	ENSOCUP00000003161	ENSOCUP00000007097	Cobalamin binding intrinsic factor.	Calpain 8; Belongs to the peptidase C2 family.	0.600
CBLIF	CD320	ENSOCUP00000003161	ENSOCUP00000030925	Cobalamin binding intrinsic factor.	CD320 molecule.	0.817
CBLIF	CUBN	ENSOCUP00000003161	ENSOCUP00000026235	Cobalamin binding intrinsic factor.	Cubilin.	0.895