G1SKT5_RABIT protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G1SKT5_RABIT

Uncharacterized protein. (200 aa)

Predicted Functional Partners:

IRF2

0.793

VGLL4

0.706

IRF2BPL

0.664

EIF2S2

0.497

TARBP1

0.496

RBM46

0.412

NCOR1

0.405

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF2S2	G1SKT5_RABIT	ENSOCUP00000000420	ENSOCUP00000003442	Eukaryotic translation initiation factor 2 subunit 2; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyz [...]	Uncharacterized protein.	0.497
G1SKT5_RABIT	EIF2S2	ENSOCUP00000003442	ENSOCUP00000000420	Uncharacterized protein.	Eukaryotic translation initiation factor 2 subunit 2; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyz [...]	0.497
G1SKT5_RABIT	IRF2	ENSOCUP00000003442	ENSOCUP00000036069	Uncharacterized protein.	Interferon regulatory factor 2.	0.793
G1SKT5_RABIT	IRF2BPL	ENSOCUP00000003442	ENSOCUP00000022913	Uncharacterized protein.	Interferon regulatory factor 2 binding protein like.	0.664
G1SKT5_RABIT	NCOR1	ENSOCUP00000003442	ENSOCUP00000009022	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.405
G1SKT5_RABIT	RBM46	ENSOCUP00000003442	ENSOCUP00000044496	Uncharacterized protein.	RNA binding motif protein 46.	0.412
G1SKT5_RABIT	TARBP1	ENSOCUP00000003442	ENSOCUP00000014969	Uncharacterized protein.	TAR (HIV-1) RNA binding protein 1.	0.496
G1SKT5_RABIT	VGLL4	ENSOCUP00000003442	ENSOCUP00000042150	Uncharacterized protein.	Vestigial like family member 4.	0.706
IRF2	G1SKT5_RABIT	ENSOCUP00000036069	ENSOCUP00000003442	Interferon regulatory factor 2.	Uncharacterized protein.	0.793
IRF2	IRF2BPL	ENSOCUP00000036069	ENSOCUP00000022913	Interferon regulatory factor 2.	Interferon regulatory factor 2 binding protein like.	0.818
IRF2	VGLL4	ENSOCUP00000036069	ENSOCUP00000042150	Interferon regulatory factor 2.	Vestigial like family member 4.	0.402
IRF2BPL	G1SKT5_RABIT	ENSOCUP00000022913	ENSOCUP00000003442	Interferon regulatory factor 2 binding protein like.	Uncharacterized protein.	0.664
IRF2BPL	IRF2	ENSOCUP00000022913	ENSOCUP00000036069	Interferon regulatory factor 2 binding protein like.	Interferon regulatory factor 2.	0.818
IRF2BPL	VGLL4	ENSOCUP00000022913	ENSOCUP00000042150	Interferon regulatory factor 2 binding protein like.	Vestigial like family member 4.	0.718
NCOR1	G1SKT5_RABIT	ENSOCUP00000009022	ENSOCUP00000003442	Nuclear receptor corepressor 1.	Uncharacterized protein.	0.405
RBM46	G1SKT5_RABIT	ENSOCUP00000044496	ENSOCUP00000003442	RNA binding motif protein 46.	Uncharacterized protein.	0.412
TARBP1	G1SKT5_RABIT	ENSOCUP00000014969	ENSOCUP00000003442	TAR (HIV-1) RNA binding protein 1.	Uncharacterized protein.	0.496
VGLL4	G1SKT5_RABIT	ENSOCUP00000042150	ENSOCUP00000003442	Vestigial like family member 4.	Uncharacterized protein.	0.706
VGLL4	IRF2	ENSOCUP00000042150	ENSOCUP00000036069	Vestigial like family member 4.	Interferon regulatory factor 2.	0.402
VGLL4	IRF2BPL	ENSOCUP00000042150	ENSOCUP00000022913	Vestigial like family member 4.	Interferon regulatory factor 2 binding protein like.	0.718