STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGLN3Transgelin 3. (203 aa)    
Predicted Functional Partners:
ACTA2
Actin, aortic smooth muscle, intermediate form; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
   
 0.788
MYH11
Myosin-11; Muscle contraction.
   
  
 0.763
SMTN
Smoothelin.
   
  
 0.716
MYOCD
Myocardin.
      
 0.668
MYL9
Myosin light chain 9.
   
 0.615
EFHB
EF-hand domain family member B.
   
   0.581
VCL
Vinculin.
   
 
 0.576
ACTG2
Actin gamma 2, smooth muscle.
   
 0.570
WDR1
WD repeat domain 1.
   
 
 0.550
CFAP20
Cilia and flagella associated protein 20.
   
 
 0.534
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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