Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MITD1Microtubule interacting and trafficking domain containing 1. (249 aa)    
Predicted Functional Partners:
CHMP5
Charged multivesicular body protein 5.
   
 
 0.896
CHMP1A
Charged multivesicular body protein 1A.
    
 
 0.835
CHMP1B
Charged multivesicular body protein 1B.
    
 
 0.835
CHMP2A
Charged multivesicular body protein 2A.
   
 
 0.792
MRPL30
Ribosomal_L30 domain-containing protein.
      
 0.760
TPRKB
Uncharacterized protein; Belongs to the CGI121/TPRKB family.
   
  
 0.694
THUMPD2
THUMP domain containing 2.
   
  
 0.649
IST1
IST1 factor associated with ESCRT-III.
      
 0.622
SMAGP
Small cell adhesion glycoprotein.
      
 0.599
TSNAXIP1
Translin associated factor X interacting protein 1.
   
  
 0.567
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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