Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM38Tripartite motif containing 38. (465 aa)    
Predicted Functional Partners:
TAB2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 
 0.817
TAB3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 
 0.687
FAM222A
Family with sequence similarity 222 member A.
      
 0.642
TRIM25
RING-type domain-containing protein.
      
 0.590
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.584
DDX41
DEAD-box helicase 41.
    
 0.554
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.543
CXorf38
Chromosome X open reading frame 38.
    
 0.529
TRIM56
Tripartite motif containing 56.
   
  
0.528
TRIM29
Tripartite motif containing 29.
    
 
 0.519
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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