STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM38Tripartite motif containing 38. (465 aa)    
Predicted Functional Partners:
TRIM25
RING-type domain-containing protein.
      
 0.611
CXorf38
Chromosome X open reading frame 38.
    
 0.602
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.595
AMFR
Autocrine motility factor receptor.
   
 
 0.552
USP4
Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.
   
 
 0.542
RNF5
Ring finger protein 5.
   
  
 0.541
TRIM56
Tripartite motif containing 56.
   
  
0.541
TBK1
TANK binding kinase 1.
   
 0.540
TAB2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 
 0.538
TRIM14
Tripartite motif containing 14.
   
0.537
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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