Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NRP1Neuropilin; Belongs to the neuropilin family. (950 aa)    
Predicted Functional Partners:
SEMA3A
Semaphorin 3A; Belongs to the semaphorin family.
   
 0.998
PLXNA4
Plexin A4.
   
 0.991
SEMA3B
Semaphorin 3B; Belongs to the semaphorin family.
    
 0.989
PLXNA2
Plexin A2.
   
 0.988
KDR
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
    
 0.985
PLXNA1
Plexin A1.
   
 0.984
PLXNA3
Sema domain-containing protein.
   
 0.981
SEMA3F
Semaphorin 3F; Belongs to the semaphorin family.
    
 0.975
SEMA3C
Semaphorin 3C; Belongs to the semaphorin family.
  
 
 0.974
L1CAM
Uncharacterized protein.
    
 0.973
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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