STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD3Uncharacterized protein. (411 aa)    
Predicted Functional Partners:
SUCO
SUN domain containing ossification factor.
   
  
 0.799
RDH12
Retinol dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.743
RPGRIP1
RPGR interacting protein 1.
      
 0.740
PHF1
PHD finger protein 1.
      
 0.704
TULP1
Tubby-like protein; Belongs to the TUB family.
      
 0.685
AIPL1
Aryl hydrocarbon receptor interacting protein like 1.
      
 0.680
SPATA7
Spermatogenesis associated 7.
      
 0.659
RPE65
Retinoid isomerohydrolase RPE65.
      
 0.652
SNCA
Alpha-synuclein; Belongs to the synuclein family.
      
 0.650
IQCB1
IQ motif containing B1.
      
 0.649
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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