DDX17 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX17

DEAD-box helicase 17; Belongs to the DEAD box helicase family. (716 aa)

Predicted Functional Partners:

DDX5

0.924

DHX9

0.906

ESR1

0.903

DGCR8

0.896

DROSHA

0.882

PES1

0.845

DHX36

0.843

DHX15

0.787

DKC1

0.775

DDX3X

0.766

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX17	DDX3X	ENSOCUP00000004311	ENSOCUP00000010621	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	0.766
DDX17	DDX5	ENSOCUP00000004311	ENSOCUP00000043262	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.924
DDX17	DGCR8	ENSOCUP00000004311	ENSOCUP00000003136	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DGCR8 microprocessor complex subunit.	0.896
DDX17	DHX15	ENSOCUP00000004311	ENSOCUP00000002633	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DEAH-box helicase 15.	0.787
DDX17	DHX36	ENSOCUP00000004311	ENSOCUP00000043415	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DEAH-box helicase 36.	0.843
DDX17	DHX9	ENSOCUP00000004311	ENSOCUP00000029909	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	DExH-box helicase 9.	0.906
DDX17	DKC1	ENSOCUP00000004311	ENSOCUP00000019728	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Dyskerin pseudouridine synthase 1.	0.775
DDX17	DROSHA	ENSOCUP00000004311	ENSOCUP00000000327	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Drosha ribonuclease III.	0.882
DDX17	ESR1	ENSOCUP00000004311	ENSOCUP00000004174	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.903
DDX17	PES1	ENSOCUP00000004311	ENSOCUP00000008324	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.845
DDX3X	DDX17	ENSOCUP00000010621	ENSOCUP00000004311	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	0.766
DDX3X	DDX5	ENSOCUP00000010621	ENSOCUP00000043262	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.848
DDX3X	DHX15	ENSOCUP00000010621	ENSOCUP00000002633	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	DEAH-box helicase 15.	0.516
DDX3X	DHX36	ENSOCUP00000010621	ENSOCUP00000043415	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	DEAH-box helicase 36.	0.690
DDX3X	DHX9	ENSOCUP00000010621	ENSOCUP00000029909	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	DExH-box helicase 9.	0.864
DDX3X	DROSHA	ENSOCUP00000010621	ENSOCUP00000000327	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	Drosha ribonuclease III.	0.423
DDX3X	PES1	ENSOCUP00000010621	ENSOCUP00000008324	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.661
DDX5	DDX17	ENSOCUP00000043262	ENSOCUP00000004311	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	0.924
DDX5	DDX3X	ENSOCUP00000043262	ENSOCUP00000010621	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family.	0.848
DDX5	DGCR8	ENSOCUP00000043262	ENSOCUP00000003136	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DGCR8 microprocessor complex subunit.	0.844