N4BP2 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

N4BP2

NEDD4 binding protein 2. (1670 aa)

Predicted Functional Partners:

G1U7A6_RABIT

0.824

PDS5A

0.723

PALB2

0.719

TMEM156

0.681

MRTO4

0.662

NDUFA6

0.647

NDUFA2

0.627

NDUFS6

0.626

NDUFAB1

0.621

G1U2N6_RABIT

0.620

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G1U2N6_RABIT	G1U7A6_RABIT	ENSOCUP00000023638	ENSOCUP00000025308	Uncharacterized protein.	Uncharacterized protein.	0.967
G1U2N6_RABIT	N4BP2	ENSOCUP00000023638	ENSOCUP00000004432	Uncharacterized protein.	NEDD4 binding protein 2.	0.620
G1U2N6_RABIT	NDUFA2	ENSOCUP00000023638	ENSOCUP00000003664	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.968
G1U2N6_RABIT	NDUFA6	ENSOCUP00000023638	ENSOCUP00000013261	Uncharacterized protein.	NADH:ubiquinone oxidoreductase subunit A6; Belongs to the complex I LYR family.	0.974
G1U2N6_RABIT	NDUFAB1	ENSOCUP00000023638	ENSOCUP00000007307	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.925
G1U2N6_RABIT	NDUFS6	ENSOCUP00000023638	ENSOCUP00000039783	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.949
G1U2N6_RABIT	PALB2	ENSOCUP00000023638	ENSOCUP00000007310	Uncharacterized protein.	Partner and localizer of BRCA2.	0.762
G1U7A6_RABIT	G1U2N6_RABIT	ENSOCUP00000025308	ENSOCUP00000023638	Uncharacterized protein.	Uncharacterized protein.	0.967
G1U7A6_RABIT	N4BP2	ENSOCUP00000025308	ENSOCUP00000004432	Uncharacterized protein.	NEDD4 binding protein 2.	0.824
G1U7A6_RABIT	NDUFA2	ENSOCUP00000025308	ENSOCUP00000003664	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
G1U7A6_RABIT	NDUFA6	ENSOCUP00000025308	ENSOCUP00000013261	Uncharacterized protein.	NADH:ubiquinone oxidoreductase subunit A6; Belongs to the complex I LYR family.	0.999
G1U7A6_RABIT	NDUFAB1	ENSOCUP00000025308	ENSOCUP00000007307	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.996
G1U7A6_RABIT	NDUFS6	ENSOCUP00000025308	ENSOCUP00000039783	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.998
G1U7A6_RABIT	PALB2	ENSOCUP00000025308	ENSOCUP00000007310	Uncharacterized protein.	Partner and localizer of BRCA2.	0.969
MRTO4	N4BP2	ENSOCUP00000000241	ENSOCUP00000004432	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	NEDD4 binding protein 2.	0.662
N4BP2	G1U2N6_RABIT	ENSOCUP00000004432	ENSOCUP00000023638	NEDD4 binding protein 2.	Uncharacterized protein.	0.620
N4BP2	G1U7A6_RABIT	ENSOCUP00000004432	ENSOCUP00000025308	NEDD4 binding protein 2.	Uncharacterized protein.	0.824
N4BP2	MRTO4	ENSOCUP00000004432	ENSOCUP00000000241	NEDD4 binding protein 2.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.662
N4BP2	NDUFA2	ENSOCUP00000004432	ENSOCUP00000003664	NEDD4 binding protein 2.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.627
N4BP2	NDUFA6	ENSOCUP00000004432	ENSOCUP00000013261	NEDD4 binding protein 2.	NADH:ubiquinone oxidoreductase subunit A6; Belongs to the complex I LYR family.	0.647