STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS9D1VPS9 domain containing 1. (567 aa)    
Predicted Functional Partners:
ZNF276
Zinc finger protein 276.
      
 0.796
MAPKAPK5
MAPK activated protein kinase 5.
      
 0.708
MPRIP
Uncharacterized protein.
   
  
 0.562
ASB3
Uncharacterized protein.
      
 0.515
DND1
DND microRNA-mediated repression inhibitor 1.
   
  
 0.503
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.495
CDHR3
Cadherin related family member 3.
   
  
 0.493
COX17
Cytochrome c oxidase copper chaperone COX17.
      
 0.481
DBNDD1
Uncharacterized protein.
   
  
 0.467
MKRN3
Makorin ring finger protein 3.
   
  
 0.417
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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