CIPC protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CIPC

CLOCK interacting pacemaker. (391 aa)

Predicted Functional Partners:

ITSN2

0.940

NPAS2

0.736

CLOCK

0.736

LOC100345774

0.699

ARNTL2

0.662

PASD1

0.633

LIPC

0.552

ARNTL

0.461

NACA

0.445

LY75

0.434

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARNTL	ARNTL2	ENSOCUP00000005145	ENSOCUP00000027510	Aryl hydrocarbon receptor nuclear translocator like.	Aryl hydrocarbon receptor nuclear translocator like 2.	0.630
ARNTL	CIPC	ENSOCUP00000005145	ENSOCUP00000004585	Aryl hydrocarbon receptor nuclear translocator like.	CLOCK interacting pacemaker.	0.461
ARNTL	CLOCK	ENSOCUP00000005145	ENSOCUP00000024429	Aryl hydrocarbon receptor nuclear translocator like.	Clock circadian regulator.	0.994
ARNTL	NPAS2	ENSOCUP00000005145	ENSOCUP00000016233	Aryl hydrocarbon receptor nuclear translocator like.	Neuronal PAS domain protein 2.	0.931
ARNTL	PASD1	ENSOCUP00000005145	ENSOCUP00000026799	Aryl hydrocarbon receptor nuclear translocator like.	PAS domain-containing protein.	0.858
ARNTL2	ARNTL	ENSOCUP00000027510	ENSOCUP00000005145	Aryl hydrocarbon receptor nuclear translocator like 2.	Aryl hydrocarbon receptor nuclear translocator like.	0.630
ARNTL2	CIPC	ENSOCUP00000027510	ENSOCUP00000004585	Aryl hydrocarbon receptor nuclear translocator like 2.	CLOCK interacting pacemaker.	0.662
ARNTL2	CLOCK	ENSOCUP00000027510	ENSOCUP00000024429	Aryl hydrocarbon receptor nuclear translocator like 2.	Clock circadian regulator.	0.849
ARNTL2	NPAS2	ENSOCUP00000027510	ENSOCUP00000016233	Aryl hydrocarbon receptor nuclear translocator like 2.	Neuronal PAS domain protein 2.	0.869
ARNTL2	PASD1	ENSOCUP00000027510	ENSOCUP00000026799	Aryl hydrocarbon receptor nuclear translocator like 2.	PAS domain-containing protein.	0.822
CIPC	ARNTL	ENSOCUP00000004585	ENSOCUP00000005145	CLOCK interacting pacemaker.	Aryl hydrocarbon receptor nuclear translocator like.	0.461
CIPC	ARNTL2	ENSOCUP00000004585	ENSOCUP00000027510	CLOCK interacting pacemaker.	Aryl hydrocarbon receptor nuclear translocator like 2.	0.662
CIPC	CLOCK	ENSOCUP00000004585	ENSOCUP00000024429	CLOCK interacting pacemaker.	Clock circadian regulator.	0.736
CIPC	ITSN2	ENSOCUP00000004585	ENSOCUP00000019448	CLOCK interacting pacemaker.	Intersectin 2.	0.940
CIPC	LIPC	ENSOCUP00000004585	ENSOCUP00000001411	CLOCK interacting pacemaker.	Hepatic triacylglycerol lipase; Hepatic lipase has the capacity to catalyze hydrolysis of phospholipids, mono-, di-, and triglycerides, and acyl-CoA thioesters. It is an important enzyme in HDL metabolism. Hepatic lipase binds heparin (By similarity).	0.552
CIPC	LOC100345774	ENSOCUP00000004585	ENSOCUP00000018431	CLOCK interacting pacemaker.	Uncharacterized protein.	0.699
CIPC	LY75	ENSOCUP00000004585	ENSOCUP00000010990	CLOCK interacting pacemaker.	Uncharacterized protein.	0.434
CIPC	NACA	ENSOCUP00000004585	ENSOCUP00000047573	CLOCK interacting pacemaker.	NAC-A/B domain-containing protein.	0.445
CIPC	NPAS2	ENSOCUP00000004585	ENSOCUP00000016233	CLOCK interacting pacemaker.	Neuronal PAS domain protein 2.	0.736
CIPC	PASD1	ENSOCUP00000004585	ENSOCUP00000026799	CLOCK interacting pacemaker.	PAS domain-containing protein.	0.633