Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SYT13Synaptotagmin 13. (425 aa)    
Predicted Functional Partners:
SPATA20
Spermatogenesis-associated protein 20; May play a role in fertility regulation.
      
 0.689
CCIN
Calicin.
      
 0.651
ODF1
Outer dense fiber of sperm tails 1.
      
 0.627
SPPL2C
Signal peptide peptidase like 2C.
      
 0.618
VAMP2
V-SNARE coiled-coil homology domain-containing protein.
    
 0.617
SPATA18
Spermatogenesis associated 18.
      
 0.612
KCNK16
Potassium two pore domain channel subfamily K member 16; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.568
INA
Internexin neuronal intermediate filament protein alpha; Belongs to the intermediate filament family.
   
 
 0.564
VAMP1
Vesicle associated membrane protein 1.
    
 0.557
RRAD
RRAD, Ras related glycolysis inhibitor and calcium channel regulator.
      
 0.556
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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