Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTL4Retrotransposon Gag like 4. (309 aa)    
Predicted Functional Partners:
RTL5
Retrotransposon Gag like 5.
  
   
 0.787
RTL9
Retrotransposon Gag like 9.
      
 0.755
LDOC1
DUF4939 domain-containing protein.
      
 0.619
RIN3
Ras and Rab interactor 3.
      
 0.546
LRRK1
Leucine rich repeat kinase 1.
    
 0.533
TBXT
T-box transcription factor T.
      
 0.522
FANCM
FA complementation group M.
    
 0.507
TBX19
T-box transcription factor 19.
      
 0.493
VPS26C
VPS26 endosomal protein sorting factor C.
      
 0.492
UBE4B
Ubiquitination factor E4B.
      
 0.463
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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