STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTL4Retrotransposon Gag like 4. (309 aa)    
Predicted Functional Partners:
RTL5
Retrotransposon Gag like 5.
  
   
 0.838
RTL9
Retrotransposon Gag like 9.
      
 0.809
FANCM
FA complementation group M.
    
 0.747
LOC100343496
CAP-ZIP_m domain-containing protein.
      
 0.649
LDOC1
DUF4939 domain-containing protein.
      
 0.581
TBXT
T-box transcription factor T.
      
 0.558
RIN3
Ras and Rab interactor 3.
      
 0.557
VPS26C
VPS26 endosomal protein sorting factor C.
      
 0.540
KRT25
Keratin 25; Belongs to the intermediate filament family.
    
 0.523
TBX19
T-box transcription factor 19.
      
 0.520
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.