STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMX1ALIM homeobox transcription factor 1 alpha. (382 aa)    
Predicted Functional Partners:
FOXA2
Forkhead box A2.
    
 
 0.836
KCNJ6
Potassium voltage-gated channel subfamily J member 6.
      
 0.772
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 
 0.744
LDB1
LIM domain binding 1.
    
 0.735
WNT1
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 
 0.719
PAX2
Paired box 2.
   
 
 0.689
NEUROG2
Neurogenin 2.
    
 
 0.671
NR4A2
Nuclear receptor subfamily 4 group A member 2.
      
 0.661
LDB2
LIM domain binding 2.
    
 0.647
PAX6
Uncharacterized protein.
    
 
 0.635
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.