GTPBP2 protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GTPBP2

GTP binding protein 2. (602 aa)

Predicted Functional Partners:

MRRF

0.787

PELO

0.775

HBS1L

0.751

DCAF17

0.690

NEMF

0.678

REPS1

0.639

NRIP2

0.631

TMEM268

0.618

SNRNP70

0.591

RCBTB2

0.586

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAF17	GTPBP2	ENSOCUP00000038604	ENSOCUP00000004796	DDB1 and CUL4 associated factor 17.	GTP binding protein 2.	0.690
DCAF17	REPS1	ENSOCUP00000038604	ENSOCUP00000014480	DDB1 and CUL4 associated factor 17.	RALBP1 associated Eps domain containing 1.	0.661
GTPBP2	DCAF17	ENSOCUP00000004796	ENSOCUP00000038604	GTP binding protein 2.	DDB1 and CUL4 associated factor 17.	0.690
GTPBP2	HBS1L	ENSOCUP00000004796	ENSOCUP00000040760	GTP binding protein 2.	HBS1_N domain-containing protein.	0.751
GTPBP2	MRRF	ENSOCUP00000004796	ENSOCUP00000007371	GTP binding protein 2.	Mitochondrial ribosome recycling factor.	0.787
GTPBP2	NEMF	ENSOCUP00000004796	ENSOCUP00000037866	GTP binding protein 2.	Nuclear export mediator factor.	0.678
GTPBP2	NRIP2	ENSOCUP00000004796	ENSOCUP00000017604	GTP binding protein 2.	Nuclear receptor interacting protein 2.	0.631
GTPBP2	PELO	ENSOCUP00000004796	ENSOCUP00000021230	GTP binding protein 2.	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.775
GTPBP2	RCBTB2	ENSOCUP00000004796	ENSOCUP00000044524	GTP binding protein 2.	RCC1 and BTB domain containing protein 2.	0.586
GTPBP2	REPS1	ENSOCUP00000004796	ENSOCUP00000014480	GTP binding protein 2.	RALBP1 associated Eps domain containing 1.	0.639
GTPBP2	SNRNP70	ENSOCUP00000004796	ENSOCUP00000012958	GTP binding protein 2.	Small nuclear ribonucleoprotein U1 subunit 70.	0.591
GTPBP2	TMEM268	ENSOCUP00000004796	ENSOCUP00000004014	GTP binding protein 2.	Transmembrane protein 268.	0.618
HBS1L	GTPBP2	ENSOCUP00000040760	ENSOCUP00000004796	HBS1_N domain-containing protein.	GTP binding protein 2.	0.751
HBS1L	MRRF	ENSOCUP00000040760	ENSOCUP00000007371	HBS1_N domain-containing protein.	Mitochondrial ribosome recycling factor.	0.461
HBS1L	NEMF	ENSOCUP00000040760	ENSOCUP00000037866	HBS1_N domain-containing protein.	Nuclear export mediator factor.	0.809
HBS1L	PELO	ENSOCUP00000040760	ENSOCUP00000021230	HBS1_N domain-containing protein.	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.992
MRRF	GTPBP2	ENSOCUP00000007371	ENSOCUP00000004796	Mitochondrial ribosome recycling factor.	GTP binding protein 2.	0.787
MRRF	HBS1L	ENSOCUP00000007371	ENSOCUP00000040760	Mitochondrial ribosome recycling factor.	HBS1_N domain-containing protein.	0.461
MRRF	NEMF	ENSOCUP00000007371	ENSOCUP00000037866	Mitochondrial ribosome recycling factor.	Nuclear export mediator factor.	0.421
MRRF	PELO	ENSOCUP00000007371	ENSOCUP00000021230	Mitochondrial ribosome recycling factor.	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.453