STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATXN3Josephin domain-containing protein. (363 aa)    
Predicted Functional Partners:
ATXN2
Ataxin 2.
    
 0.966
BECN1
Uncharacterized protein.
    
 0.947
ITPR1
Inositol 1,4,5-trisphosphate receptor type 1.
     
 0.944
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.942
BECN2
Beclin 2.
    
 0.916
ITPR3
Inositol 1,4,5-trisphosphate receptor type 3.
     
 0.915
ITPR2
Inositol 1,4,5-trisphosphate receptor type 2.
     
 0.915
ATXN2L
Ataxin 2 like.
    
 0.911
HTT
Huntingtin.
    
 
 0.892
PARK2
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.
    
 0.874
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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