STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (970 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 
 0.913
SQLE
Squalene epoxidase.
    
 
 0.882
RNF145
Ring finger protein 145.
    
 
 0.880
AMFR
Autocrine motility factor receptor.
   
 
 0.825
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.818
UBE2G2
Ubiquitin conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.804
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.777
RNF139
Ring finger protein 139.
    
 
 0.773
SYVN1
Synoviolin 1.
    
 
 0.758
ROPN1L
Rhophilin associated tail protein 1 like.
 
    
 0.745
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.