STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL16A1Collagen type XVI alpha 1 chain. (1606 aa)    
Predicted Functional Partners:
COL6A2
Uncharacterized protein.
   
 0.832
COL5A1
Fibrillar collagen NC1 domain-containing protein.
 
 
 0.770
FBN1
Fibrillin 1.
   
 0.659
COL5A2
Collagen type V alpha 2 chain.
  
0.646
COL1A2
Collagen alpha-2(I) chain; Type I collagen is a member of group I collagen (fibrillar forming collagen); Belongs to the fibrillar collagen family.
  
0.628
COL11A1
Collagen type XI alpha 1 chain.
  
0.605
COL3A1
Collagen type III alpha 1 chain.
  
0.598
BGN
Biglycan; May be involved in collagen fiber assembly.
   
 0.595
THBS3
Thrombospondin 3.
   
 0.586
COL24A1
Collagen type XXIV alpha 1 chain.
  
 
0.582
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.