STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPOCD1SPOC domain containing 1. (1153 aa)    
Predicted Functional Partners:
ZKSCAN2
Zinc finger with KRAB and SCAN domains 2.
   
  
 0.832
DNAJC9
Uncharacterized protein.
      
 0.733
SPEN
Spen family transcriptional repressor.
   
  
 0.694
SH2D5
SH2 domain containing 5.
      
 0.675
TEX15
Testis expressed 15, meiosis and synapsis associated.
   
  
 0.673
POLR2C
RNA polymerase II subunit C.
    
  0.666
EVI2A
Uncharacterized protein.
      
 0.664
NIPBL
Nipped-B protein.
   
  
 0.652
TRIP12
Thyroid hormone receptor interactor 12.
   
  
 0.643
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.635
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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