Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM2BLysine demethylase 2B. (1341 aa)    
Predicted Functional Partners:
PCGF1
Polycomb group ring finger 1.
   
 0.990
RYBP
RING1 and YY1 binding protein.
    
 
 0.980
YAF2
YY1 associated factor 2.
   
 
 0.972
BCOR
BCL6 corepressor.
   
 0.954
RNF2
RING-type domain-containing protein.
   
 0.937
PCGF3
Polycomb group ring finger 3.
   
 0.928
PCGF6
Polycomb group ring finger 6.
   
 0.911
PCGF2
Polycomb group ring finger 2.
   
 0.905
PCGF5
Polycomb group ring finger 5.
   
 0.889
SKP1
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.888
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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