G1SQB5_RABIT protein (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G1SQB5_RABIT

ZP domain-containing protein. (568 aa)

Predicted Functional Partners:

PPY

0.711

LOC100349163

0.692

CD36

0.641

GTPBP1

0.638

NPC1

0.593

SV2A

0.524

SV2C

0.524

SV2B

0.522

TRIM31

0.519

FURIN

0.510

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD36	G1SQB5_RABIT	ENSOCUP00000002156	ENSOCUP00000005282	CD36 molecule; Belongs to the CD36 family.	ZP domain-containing protein.	0.641
CD36	GTPBP1	ENSOCUP00000002156	ENSOCUP00000024972	CD36 molecule; Belongs to the CD36 family.	GTP binding protein 1.	0.420
FURIN	G1SQB5_RABIT	ENSOCUP00000029858	ENSOCUP00000005282	Furin, paired basic amino acid cleaving enzyme; Belongs to the peptidase S8 family.	ZP domain-containing protein.	0.510
FURIN	NPC1	ENSOCUP00000029858	ENSOCUP00000026876	Furin, paired basic amino acid cleaving enzyme; Belongs to the peptidase S8 family.	SSD domain-containing protein.	0.530
G1SQB5_RABIT	CD36	ENSOCUP00000005282	ENSOCUP00000002156	ZP domain-containing protein.	CD36 molecule; Belongs to the CD36 family.	0.641
G1SQB5_RABIT	FURIN	ENSOCUP00000005282	ENSOCUP00000029858	ZP domain-containing protein.	Furin, paired basic amino acid cleaving enzyme; Belongs to the peptidase S8 family.	0.510
G1SQB5_RABIT	GTPBP1	ENSOCUP00000005282	ENSOCUP00000024972	ZP domain-containing protein.	GTP binding protein 1.	0.638
G1SQB5_RABIT	LOC100349163	ENSOCUP00000005282	ENSOCUP00000025722	ZP domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.692
G1SQB5_RABIT	NPC1	ENSOCUP00000005282	ENSOCUP00000026876	ZP domain-containing protein.	SSD domain-containing protein.	0.593
G1SQB5_RABIT	PPY	ENSOCUP00000005282	ENSOCUP00000025326	ZP domain-containing protein.	Pancreatic hormone; Pancreatic hormone is synthesized in pancreatic islets of Langerhans and acts as a regulator of pancreatic and gastrointestinal functions; Belongs to the NPY family.	0.711
G1SQB5_RABIT	SV2A	ENSOCUP00000005282	ENSOCUP00000003381	ZP domain-containing protein.	Synaptic vesicle glycoprotein 2A.	0.524
G1SQB5_RABIT	SV2B	ENSOCUP00000005282	ENSOCUP00000002662	ZP domain-containing protein.	Synaptic vesicle glycoprotein 2B.	0.522
G1SQB5_RABIT	SV2C	ENSOCUP00000005282	ENSOCUP00000024186	ZP domain-containing protein.	Synaptic vesicle glycoprotein 2C.	0.524
G1SQB5_RABIT	TRIM31	ENSOCUP00000005282	ENSOCUP00000033641	ZP domain-containing protein.	Uncharacterized protein.	0.519
GTPBP1	CD36	ENSOCUP00000024972	ENSOCUP00000002156	GTP binding protein 1.	CD36 molecule; Belongs to the CD36 family.	0.420
GTPBP1	G1SQB5_RABIT	ENSOCUP00000024972	ENSOCUP00000005282	GTP binding protein 1.	ZP domain-containing protein.	0.638
GTPBP1	NPC1	ENSOCUP00000024972	ENSOCUP00000026876	GTP binding protein 1.	SSD domain-containing protein.	0.646
LOC100349163	G1SQB5_RABIT	ENSOCUP00000025722	ENSOCUP00000005282	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	ZP domain-containing protein.	0.692
NPC1	FURIN	ENSOCUP00000026876	ENSOCUP00000029858	SSD domain-containing protein.	Furin, paired basic amino acid cleaving enzyme; Belongs to the peptidase S8 family.	0.530
NPC1	G1SQB5_RABIT	ENSOCUP00000026876	ENSOCUP00000005282	SSD domain-containing protein.	ZP domain-containing protein.	0.593