Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM47Tripartite motif containing 47. (646 aa)    
Predicted Functional Partners:
DDX58
DExD/H-box helicase 58.
   
 0.848
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.693
TRIM67
Tripartite motif containing 67.
   
 0.659
NUDCD1
NudC domain containing 1.
    
   0.625
TRIM25
RING-type domain-containing protein.
     
0.616
SH3GLB1
SH3 domain containing GRB2 like, endophilin B1.
    
   0.616
TRIM23
Tripartite motif containing 23.
    
 0.566
SQSTM1
Sequestosome 1.
    
 0.563
ZC3HAV1
Poly [ADP-ribose] polymerase.
   
  0.557
IFIH1
Interferon induced with helicase C domain 1.
   
 0.553
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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