STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTLL6Tubulin tyrosine ligase like 6. (893 aa)    
Predicted Functional Partners:
CEP41
Centrosomal protein 41.
      
 0.933
GMNC
Geminin coiled-coil domain containing.
   
  
 0.663
AGBL5
ATP/GTP binding protein like 5.
      
 0.645
CCDC65
Uncharacterized protein.
      
 0.617
CCDC65-2
NYD-SP28 domain-containing protein.
      
 0.617
SPAST
Spastin; Belongs to the AAA ATPase family.
      
 0.587
CCDC39
Coiled-coil domain containing 39.
   
  
 0.555
DNALI1
Dynein axonemal light intermediate chain 1.
   
  
 0.554
TTLL12
Uncharacterized protein.
      
 0.520
UBE2Z
Ubiquitin conjugating enzyme E2 Z.
      
 0.512
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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